RnoEX0025935 @ rn6
Exon Skipping
Gene
ENSRNOG00000028891 | Cyp2t1
Description
cytochrome P450, family 2, subfamily t, polypeptide 1 [Source:RGD Symbol;Acc:620086]
Coordinates
chr1:83967137-83968430:+
Coord C1 exon
chr1:83967137-83967297
Coord A exon
chr1:83968038-83968214
Coord C2 exon
chr1:83968289-83968430
Length
177 bp
Sequences
Splice sites
3' ss Seq
AAAGAACCTTGTCTCTCCAGACA
3' ss Score
5.34
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAGCTCCATTTGACCCTCGGCGGCTACTGGACAACGCTGTATCCAACGTCATTTGTACTGTGGTCTTCGGAAAGCGCTACAACTATGGAGACCCAGAGTTCCTGAGGCTCCTGGACCTCTTCAGTGACAATTTCCGTATCATGAGTTCCCGATGGGGTGAG
Seq A exon
ACATACAACATGTTCCCATCCTTCATGGACTGGATCCCTGGTCCCCACCACCGAATCTTCAAAAATTTCCAAGAGCTTCGGCTCTTCATCTCTGAGCAAATTCAGTGGCACCGGCAGTCACGACAGACTGGGGAGCCCCGTGACTTCATTGATTGTTTCCTCGAACAAATGGATAAG
Seq C2 exon
GAACATCAGGACCCGGAAAGCCATTTCCAGGATGAGACACTGGTGATGACTACTCACAATCTTTTCTTTGGTGGCACGGAGACCACAAGCACCACTCTGCGTTATGGGCTCCTCATTATGCTCAAGTACCCTGAGGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028891-'8-17,'8-14,9-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAACGCTGTATCCAACGT
R:
ATGAGGAGCCCATAACGCAGA
Band lengths:
249-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]