RnoEX0026001 @ rn6
Exon Skipping
Gene
ENSRNOG00000015751 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:RGD Symbol;Acc:1305261]
Coordinates
chr16:19526241-19527289:+
Coord C1 exon
chr16:19526241-19526374
Coord A exon
chr16:19526456-19526520
Coord C2 exon
chr16:19527207-19527289
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGGTTCATTTTCCCCACAGGCG
3' ss Score
10.72
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGCTGCCATTCCTCACCATGTGCATTAAGGAGAGCCTGCGACTGCATCCTCCGGCCACGGCAATCTCCCGCTGCTGCACTCAAGACATTATGCTCCCAGATGGCCGGGTCATCCCTAAAG
Seq A exon
GCGTCATCTGCCGAATAAGTATTTTCGGGACCCATCACAATCCAGCTGTGTGGCCAGACCCGGAG
Seq C2 exon
GTGTATAACCCCTTCCGCTTTGATGCAGACAACGGCGAGGGCAGGTCACCCCTGGCTTTTATTCCTTTTTCGGCTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015751-'16-20,'16-19,17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCATTAAGGAGAGCCTGC
R:
GGCCCAGCCGAAAAAGGAATA
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]