RnoEX0026006 @ rn6
Exon Skipping
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14441476-14486909:+
Coord C1 exon
chr7:14441476-14441585
Coord A exon
chr7:14482062-14482164
Coord C2 exon
chr7:14486687-14486909
Length
103 bp
Sequences
Splice sites
3' ss Seq
CGCTGTTTCATTTCCTTCAGGAG
3' ss Score
10
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATTCGAAGTCCACAGTCTACATTAGTGTCTCCTGGTGCTGTTCACTCGGACTCCTGTCCAGGCTACTATTTGCTGTGTGGGCGGGTGGAACCCAGGGCCCTGCACATTAG
Seq A exon
GAGCTGGCCCAAGGTCAAGGATCTGAGTCCCAGCAACTTCTCTGAGAAGTGGTTTCAGCAAATACCAGGAAAGCGAGAAGAAAGTTGAGAGAATTGAACGCAG
Seq C2 exon
GATGCTACCCATCACCGACTACCTGCTGTACCTGCTGGGACTGGAGAAGACCGCCTTCCGCGTGTACGTCCTATCGGCTCTGCTGCTTTTCCTCCTTTTCCTCCTCTTCCGCCTGCTCCTGCAGGCATTCAAATTATTCAGTGACTTCCGCATCACCTGTCGCCGGCTGAGCTGCTTCCCAGAGCCTCCAGGCCGCCACTGGCTACTGGGCCACATGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=18.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCCTGGTGCTGTTCAC
R:
GACAGGTGATGCGGAAGTCAC
Band lengths:
247-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]