RnoEX0026022 @ rn6
Exon Skipping
Gene
ENSRNOG00000043233 | Cyp4f6
Description
cytochrome P450, family 4, subfamily f, polypeptide 6 [Source:RGD Symbol;Acc:708365]
Coordinates
chr7:15207699-15209853:-
Coord C1 exon
chr7:15209800-15209853
Coord A exon
chr7:15209584-15209711
Coord C2 exon
chr7:15207699-15207820
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTCATGGCTGCCCTCCCAGGGG
3' ss Score
6.42
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CTGCTGTTGCACCCAAGGAAATGACCCTCTATGGCTTCCTGAAGCCCTGGCTGG
Seq A exon
GGGATGGGCTCCTGATGAGCGCTGGTGAGAAGTGGAACCACCACCGACGCCTGCTGACACCCGCCTTCCACTTTGACATCCTGAAGTCCTACGTGAAGATTTTTAACAAGAGCGTGAACACCATGCAT
Seq C2 exon
GCCAAGTGGCAGCGTCTGACTGCCAAGGGCAGTGCCCGTCTGGACATGTTCGAGCACATCAGCCTGATGACCTTGGACAGCCTGCAAAAATGCATCTTCAGCTTCGACAGCAACTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043233_MULTIEX1-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(27.1=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGCACCCAAGGAAAT
R:
CTGTCGAAGCTGAAGATGCAT
Band lengths:
163-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]