RnoEX0026137 @ rn6
Exon Skipping
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:14990691-15037298:+
Coord C1 exon
chr3:14990691-14990824
Coord A exon
chr3:15019044-15019266
Coord C2 exon
chr3:15037145-15037298
Length
223 bp
Sequences
Splice sites
3' ss Seq
TTATCACCTCTCCCCTCTAGGAA
3' ss Score
11.27
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
CAGGCTTCCTCAGCGCCGCCTCAAGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAACTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCAGCCACCGCCGCCGCGGACAATGAGAG
Seq A exon
GAAATGTTACCGAGACTTGGAAACTAGGAGAGCAAACCTAGGCCACAGAGGAAGGCCGCAGCCGGACAGGAAGGAGCCTTCCTTCAGTGTGCTCTGGGGGATGGGCAGGTGCATGTGTGGCCAGTTGGGGTGCTGTTGGGTCAGCATGTCCAGAACACGGCCAGATCTGGGGACCAGATGGAGTAAGGGCCCAAGTACAGCCTCTTCAACAGGCCTGCGCACG
Seq C2 exon
GTCCCATCTGATGCCAAGGCTGAAGGAATCTCGATCACACGAGTCCCTGCTCAGCCCCAGCAGCGCAGTGGAGGCCCTGGACCTCAGCATGGAGGAGGAGGTGCTTATCAAGCCTGTTCACAGCAGCATCCTGGGTCAGGACTACTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=0.640 C2=0.423
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(33.3=100)
A:
NO
C2:
PF0016924=PH=FE(38.6=100)
Main Inclusion Isoform:
ENSRNOT00000080760fB3855
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAGGCTCCATCAAGCG
R:
TCGAAGCAGTAGTCCTGACCC
Band lengths:
269-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]