RnoEX0027089 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22149308-22198933:-
Coord C1 exon
chr3:22198808-22198933
Coord A exon
chr3:22151102-22151167
Coord C2 exon
chr3:22149308-22149500
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTAAATCATGACAGGGA
3' ss Score
7.22
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCCACAACCACAGGCGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTTCTTTGGCAGCTACCGGAATGCACTGAAAATTGAGCCA
Seq A exon
GGACATCAATCCTTCGCCTGGTGTATGAAGGCCTGGTATATTAATTGGCTGTCAGATTCTGAAGAG
Seq C2 exon
GGAACATCAAGCCTCTCTGTCTGCCAACCTGCATCCCTGTTTTCTAAGAATGAGTGCCTGGGAGGAGGTCTCCCAGAGACCCTAGCAGCATGTTGTAGATTCCAGAGACAGATCATCTACCTTCCCCCCAAGAAGTCTGCTGTTCTCACACTGCCATCAGGAGGAAGAACTGGAAGCCACTAAGAAAGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526-'38-52,'38-51,39-52
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(39.7=64.3)
A:
PF0345514=dDENN=FE(23.3=100)
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000091747fB4024
Main Skipping Isoform:
ENSRNOT00000091747fB4028
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGAAGAAGGTCTCCACA
R:
TCCTCCCAGGCACTCATTCTT
Band lengths:
174-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]