RnoEX0027091 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22431282-22439521:-
Coord C1 exon
chr3:22439421-22439521
Coord A exon
chr3:22432905-22432994
Coord C2 exon
chr3:22431282-22431382
Length
90 bp
Sequences
Splice sites
3' ss Seq
TACTGTTGCTCTCTTTTTAGAGG
3' ss Score
8.16
5' ss Seq
AAAGTGGGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
TATTTTTGTTTATTCCATTTCTTTGATCCTTGAGGTCTGTGACGCTGTGACAACTCTTTCAGGAAGACTCTAGCCTTCAGAGAGACACAGCCTTTCGTAAG
Seq A exon
AGGCAGGAGAAGAGGATGTTGTATTGGAAGTTATTCCTGATCTGCAGAACAAAGATCATTTGCCATGGCTTACTTTTCTGTCATTCCAAA
Seq C2 exon
CTATTAGGAGAAGCACACACCAGGTAGTCCTTTCTAACATAACCTTTGGAAAGACATGGGAAGCTGGTGTGTGGGGCGGTGAATTTTGAGGGCTAGGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526-'4-8,'4-7,5-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTGAGGTCTGTGACGCT
R:
TAGCCCTCAAAATTCACCGCC
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]