RnoEX0027093 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22113971-22115580:-
Coord C1 exon
chr3:22115509-22115580
Coord A exon
chr3:22114111-22114122
Coord C2 exon
chr3:22113971-22114027
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTCGTTTTTCTAGTAA
3' ss Score
8.96
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
AAAGGAAGTGGAGCGATTCTGAATACTGTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTT
Seq A exon
TAATCAGAGAAG
Seq C2 exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526-'46-64,'46-63,47-64
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTGGAGCGATTCTGAA
R:
TCCCATTTTTGCATGATCTTTTGC
Band lengths:
94-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]