RnoEX0027511 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64587776-64593517:-
Coord C1 exon
chr4:64593401-64593517
Coord A exon
chr4:64588424-64588456
Coord C2 exon
chr4:64587776-64587876
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTAAGCATTCTGCATTTCAGGCT
3' ss Score
5.42
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
TTTCACAATAAAGTGACCTGCTTCATGCTGCATCACATCGAGGAACCCTGCTCCCTGGGGGCTCATGCTGCTGTTATTGTCCCGCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
Seq A exon
GCTCTCGACACTTGGTCAAACATCTATCGTGTG
Seq C2 exon
GTGATCTCCATACCAGGAGATGAACTTGAACTTGGTTGGGCGGGAGACGGACCTGGTTGGGCGGGAGACTGGAGCCCCTCAGAGAATTTGGGATTCTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'18-13,'18-12,19-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000033268fB4094
Main Skipping Isoform:
ENSRNOT00000033268fB4100
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCACCTGGATCATTAAGG
R:
ATTCTCTGAGGGGCTCCAGTC
Band lengths:
122-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]