RnoEX0027956 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141875576-141879951:+
Coord C1 exon
chr7:141875576-141875699
Coord A exon
chr7:141876262-141876397
Coord C2 exon
chr7:141877312-141879951
Length
136 bp
Sequences
Splice sites
3' ss Seq
AGAGAAATCCTGTCTTACAGGGA
3' ss Score
4.33
5' ss Seq
AGAGTAGGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
AACGTCATGACGCCCTGTATGTGGTGGGTGCGCTGGATGAGACACTGGAGCTGAGGGGATTGCGATACCATCCTATAGATATAGAAACCTCCGTGTCGAGAGTCCACAGGAGTATTGCTGAATG
Seq A exon
GGAAGGGGAGCTGAAGTCAAGTCAGACATACTGGCTCACCTGAGCTATAGAGAGAGACTCTATCTCAGACAAACAGCACCTGTGTTGAAGTCAGCAGAAAGAACTTTGACCTTCTGGAAACGCCCCAAGTCTCAGA
Seq C2 exon
TGCTGTGTTCACGTGGACCAACTTGCTGGTGGTCGTTGTGGAACTGTGCGGCTCTGAGCAGGAAGCCCTGGACCTGGTTCCCCTCGTGACCAATGTGGTCCTGGAAGAGCATTACCTCATCGTTGGTGTTGTGGTTGTTGTGGACCCGGGGGTTGTCCCCATCAACTCCAGAGGAGAGAAGCAGAGGATGCACCTCCGAGACAGCTTCCTAGCCGACCAGTTAGACCCTATCTATGTGGCTTACAACATGTAGCCAGCACTGGAGGGGCCACAGGGGAGCCCTGTGGTTAGGAGCAGGCTTTCAGCAGGCATGAAGATGGCTCGGGTACAGCCTTCATCTCACCCTTCGGGACTCTGCAGTCACAGCACCAGGAAAACCATGTTGACAGTCCGTCAGACCTAAGCTCTGGCATGTGCGACAGCACGTCACTAAAGCAGGCACACGCATGTCGCGCTACCCTCGTCTGGTATACAGACCTGCATTTTCACCTAACCTTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-'57-55,'57-54,58-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.8=42.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000086577fB4175
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCGAGAGTCCACAGGAGT
R:
TAGGAAGCTGTCTCGGAGGTG
Band lengths:
243-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]