RnoEX0028439 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146014700-146017201:-
Coord C1 exon
chr6:146017079-146017201
Coord A exon
chr6:146015280-146015360
Coord C2 exon
chr6:146014700-146014924
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTATTTATTTATGTGACAGAGT
3' ss Score
5.32
5' ss Seq
CAAGTGTGT
5' ss Score
3.84
Exon sequences
Seq C1 exon
GTTATCACTGATGTCAGCCACACCTGGGAAGCCCTGGAATTTTCTTATGAGGTTCACCATAGAACAGGCACCCCACTGCTGAAGTCTGATGAACAGCTTTTTGAGACTCTAGAACATAACCAG
Seq A exon
AGTTTCTTACTGGGACTTGGGACTAGCTGGCTAGCCACTGAACCTTTGGGATCTGCCTATTCCCATGCTGGAATATTACAA
Seq C2 exon
GTTCAGTTGCAGACTCTTCTTCAGAGCAAGTATGTGGAATACTTCATTGATCAAGTCCTAAGCTGGCAAAACAAGCTAAATGTCGCCGATGCAGTCATCTTTACTTGGATGCAAGTCCAGCGAACCTGGTCTCACTTGGAAAGCATCTTCGTCTGTTCAGAAGATATTCGAATCCAGCTTGTGGAAGATGCCCAAAGATTTGATGAAGTAGATGCTGAGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(20.2=100)
A:
PF083938=DHC_N2=PD(5.1=37.0),PF083938=DHC_N2=PU(1.3=11.1)
C2:
PF083938=DHC_N2=FE(17.9=100)
Main Inclusion Isoform:
ENSRNOT00000007233fB4254
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCATAGAACAGGCACCCC
R:
ATGACTGCATCGGCGACATTT
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]