RnoEX0028459 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2486681-2487748:+
Coord C1 exon
chr16:2486681-2486857
Coord A exon
chr16:2487041-2487215
Coord C2 exon
chr16:2487617-2487748
Length
175 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTTTCCTATGTCAGGTA
3' ss Score
8.71
5' ss Seq
GATGTTAGT
5' ss Score
-2.8
Exon sequences
Seq C1 exon
ATAATTGAGATAGAATCTGCACAAGTAGAAGCAAAAAGAAAGATTGTGAAGTTGGATGAAGAAATAGCCAGCGGGAAGGCTGAGGAAGCCCAGGCTCTGAAAAACGAGTGTGAGAGTGACCTGGCGGAGGCCATTCCAGCCTTGGAAGCAGCGCTGTCTGCACTAGACACCCTTAAG
Seq A exon
GTATAATTTTCATTCAGAATACTTTAGTGGGATTGGAATGAATGGTCTTTGTGAATCCAAAGACGTTCTGCCCGTGGGCCAGAGGGAAGGAATGGATAGAACTGGAAACAGTCATTCTGAGTGGCGATCCAAACCCAGAAGAACAAACATCATATCTTCTCCCTCAGTTGTGGAT
Seq C2 exon
CCAGCCGATATTACAATTGTAAAATCAATGAAGAATCCTCCAGCTGGGGTTAAACTAGTCATGGCTGCTGTCTGCGTCATGAAAGATATAAAGCCAGAAAAGATTTCAGATCCTTCAGGAACTGGAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'54-59,'54-58,55-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.6=100)
A:
PF127772=MT=PD(0.1=0.0)
C2:
PF127772=MT=FE(12.3=100)
Main Inclusion Isoform:
ENSRNOT00000079215fB4256
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATAGCCAGCGGGAAGG
R:
TTGCCTCCAGTTCCTGAAGGA
Band lengths:
250-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]