RnoEX0028473 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2516334-2518685:+
Coord C1 exon
chr16:2516334-2516474
Coord A exon
chr16:2518210-2518280
Coord C2 exon
chr16:2518548-2518685
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCATTCTTTTGCACTTATAGTCT
3' ss Score
7.24
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
TTCCCAGTAACAATTCTACAGAACGGAGTGAAGATGACCAATGAGCCTCCCACTGGCCTCCGGCTGAATCTCCTTCAATCATATCTCTCTGATCCAATTTCTGATCCTGAGTTTTTCAATGGATGCCCCGGCAAAGAACTG
Seq A exon
TCTGAAGCACATGCCCACAAATCTACAAGATAATACTGACTGCTGGGATTAAAGACAGCTGTGAATATCAG
Seq C2 exon
GCATGGGAGAAATTGCTTTTTGGAGTTTGCTTTTTTCACGCCCTTGTTCAAGAGAGAAAGAAATTCGGTCCTCTAGGCTGGAATATTCCATATGGATTTAATGAGTCTGACCTACGCATCAGTATCCGGCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PD(17.1=95.7)
A:
NO
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Inclusion Isoform:
ENSRNOT00000079215fB4257
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGACCAATGAGCCTCCCA
R:
TCTCTCTTGAACAAGGGCGTG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]