RnoEX0028506 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56091319-56094814:-
Coord C1 exon
chr10:56094711-56094814
Coord A exon
chr10:56094414-56094584
Coord C2 exon
chr10:56091319-56091475
Length
171 bp
Sequences
Splice sites
3' ss Seq
TACACTGTTGCTGTCTTCAGACA
3' ss Score
7.75
5' ss Seq
CCAGTAAAT
5' ss Score
1.53
Exon sequences
Seq C1 exon
GACCGAAATTGGGAAGTCATTGAAACGACTCGCGCCAAAATAGAGCAGTTCAAGAGGACCATGCCGCTCATCTCTGATCTGCGGAACCCAGCCCTCAGAGAACG
Seq A exon
ACACTCCAGAAGAGGGCAGCAGATCTCAATATAGATGGTTATGAGCCACCATGTGGTTGCTGGGAGTTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCATCTCTCCAGCCCAGTCAGTGCTCTTAACCACTGAGCTATTTTTCCAGTCCA
Seq C2 exon
GCACTGGGACCAGGTCAAAGAGGAAATCCAGAGGGAGTTTGATCAGGAGTCAGAAAGCTTCACCTTGGAGCAGATTGTGAAACTAGGGATGGATCAGCATGTGGAGAAAATCGCGGAGATCTCAGCCTCTGCAACCAAGGAGCTGGCCATAGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'35-34,'35-33,36-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(32.4=100)
A:
PF083938=DHC_N2=PD(7.6=66.7)
C2:
PF083938=DHC_N2=FE(12.5=100)
Main Inclusion Isoform:
ENSRNOT00000090809fB4258
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATTGAAACGACTCGCGC
R:
CTATGGCCAGCTCCTTGGTTG
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]