RnoEX0028536 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81095988-81099336:+
Coord C1 exon
chr2:81095988-81096189
Coord A exon
chr2:81098401-81098543
Coord C2 exon
chr2:81099202-81099336
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATCTCCCCTGTTGTTCTCAGGTA
3' ss Score
9.99
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGCAGGCCGGGGACGTGGACCCAGAGCACCTGGGGAGGCTGTTTGTCTTTGCCATGATGTGGAGTGTGGGTGCAGTCCTGGAGTTGGAAGGTCGCCGGAGGATGGAACTCTGGCTGCGCTCACGAGAAGGGCCCACACTGCACCTGCCACAGCTGACCGATCCTGGGGACACCATGTTTGATTACTATGTTGCACCGGACG
Seq A exon
GTACTTGGAGGCATTGGAGTATGTGTATCCCAGAATACGTGTATCCACCTGATACCACCCCAGAGTATGGATCTATCCTTGTGCCAAATGTGGACAATGTGCGGACCGACTTCCTAATTAAAACCATTGCCAAACAAGGCAAG
Seq C2 exon
GCTGTGCTGTTAATTGGTGAGCAAGGAACAGCCAAAACAGTCATCATCAAAGGATTTATGTCAAAATTTGACCCTGAAAGTCACACGGTCAAGAATCTGAACTTTTCTTCGGCGACGACCCCACTGATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'50-52,'50-51,52-52
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(11.4=64.6)
C2:
PF127752=AAA_7=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTCCTGGAGTTGGAAG
R:
GGTCGTCGCCGAAGAAAAGTT
Band lengths:
252-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]