RnoEX0028539 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81112934-81120197:+
Coord C1 exon
chr2:81112934-81113132
Coord A exon
chr2:81114831-81115003
Coord C2 exon
chr2:81120067-81120197
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACCTATCACTTCTTGCCAAGGTG
3' ss Score
5.15
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAACTGCTTAGGCTGTGGAAGCATGAGTGCAAACGTGTGATAGCTGATCGCTTTAGCATGTCCAGTGATGTGACCTGGTTTGATAAGGCTGTTGTCAGTTTGGTAGAGGAGGAGTTTGGTGAAGAGAAAACACCGGTGGTGGATTGTGGAGTTGATGCTTATTTTGTGGATTTCTTGAGGGATGCACCAGAAGCTACAG
Seq A exon
GTGAAACACCTGAGGAGACTGATGCTGAAATGCCAAAGCTTTATGAGCCGATTGCCTCCCTTAATCACCTGCAAGAGCGTCTGAGCGTGTTCCTGCAGCTCTATAATGAGAGCATCCGAGGCACTGGCATGGACATGGTGTTCTTCAGAGATGCGATGGTTCACTTAGTCAAG
Seq C2 exon
ATCTCTCGAGTCATCCGCACTCCTCGGGGAAATGCCCTCCTGGTTGGTGTGGGTGGATCAGGAAAGCAGAGTCTGACAAGGCTGGCTTCCTTCATTGCGGGCTATACCTCTTTCCAGATCACTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'58-58,'58-57,59-58
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(2.9=11.9)
A:
PF127802=AAA_8=PU(8.4=39.7)
C2:
PF127802=AAA_8=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGTGATGTGACCTGGT
R:
TGGAAAGAGGTATAGCCCGCA
Band lengths:
257-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]