RnoEX0028542 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81061868-81077409:+
Coord C1 exon
chr2:81061868-81062092
Coord A exon
chr2:81064395-81064567
Coord C2 exon
chr2:81077231-81077409
Length
173 bp
Sequences
Splice sites
3' ss Seq
CAGCATCTTTTGTATTTCAGTGT
3' ss Score
7.3
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTTGGATTATTAGGAATTCAAATGCTATGGACCCGAGACTCAGAAGAAGCCCTTCAAAATGCCAAGTTTGATAAGAAAATCATGCAGAAGACCAACCAGTCCTTCCTAGAGTTACTGAACATGCTGATTGAGATGACCACAAAGGACCTGAGTTCCATGGAGCGGGTTAAATATGAGACTCTGATTACTATTCATGTGCACCAAAGGGACATCTTTGATGACCTG
Seq A exon
TGTCACATGCACGTCAAGAGCCCTACGGACTTTGAGTGGCTGAAACAGTGCAGGTTTTATTTTAAGGAGGATTCTGACAAGACGATGATCCACATCACAGACGTGGCTTTCACATACCAGAATGAGTTTTTAGGCTGCACTGACAGACTTGTCATAACTCCGCTCACAGACAG
Seq C2 exon
GTGCTACATCACATTGGCTCAAGCTCTGGGCATGAGCATGGGAGGAGCCCCTGCTGGTCCTGCAGGGACAGGCAAGACAGAGACCACCAAGGACATGGGCCGGTGTCTTGGGAAGTACGTTGTAGTTTTCAACTGCTCAGACCAGATGGATTTCCGGGGACTTGGGCGGATATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.164
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=32.8)
C2:
PF127742=AAA_6=FE(25.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCCATGGAGCGGGTTA
R:
CCAAGTCCCCGGAAATCCATC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]