RnoEX0028563 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:100936978-100941399:-
Coord C1 exon
chr4:100941177-100941399
Coord A exon
chr4:100937191-100937486
Coord C2 exon
chr4:100936978-100937078
Length
296 bp
Sequences
Splice sites
3' ss Seq
ACTGTGCCTGCTCATTCCAGGAG
3' ss Score
8.68
5' ss Seq
CAGGTCGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
TTGCCCACTCCAGAGGATGGGGTTCTCGTTCACGGGATGTTCATGGATGCTTCTCGGTGGGATGACAAGGACATGATCATAGAAGACGCATTGCCAGGACAGATGAACCCCATGCTGCCTGTAGTCCACTTTGAACCGCAACAAAATTACGAGCCAATCCAAACACTCTACCACTCCCCGCTCTACAAAACAGGAGCCCGGGCAGGAACACTTTCAACCACAG
Seq A exon
GAGCCCAAGAGTCTTCCAGTGTAGGATGGAAAGAAGGACGGACGGATAGATAGACAACTACGCGTATAGAAGCCCTACCTACCGTTAGAAACCCCTGAGTCCTATTGAAGTGTCAGGCCCAACTCCCAGCCCAGTGCTCCAGGATTCAGACTGCAGAAAACCTGAAACATACTCATCAAGATGTAAGATCTGAGACAGACGGGCCTCAAAGCACCACGTATTCTGAAATCTCCTTTTGAATGGCGTGAAACTGGAACGTTCAGAGGACTGAGCCCGGCGTCTTCAGGTTCAGCCAG
Seq C2 exon
GTCATTCAACCAACTTCGTGGTGACTGTCCTCTTACCCTCCAAGAGGCCCAGTGATTACTGGATCGCCAAGGGGTCAGCATTGCTCTGCCAGCTGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'79-84,'79-83,80-84
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.2=100)
A:
PF0302810=Dynein_heavy=PD(1.0=38.9)
C2:
PF0302810=Dynein_heavy=PD(4.0=88.2)
Main Inclusion Isoform:
ENSRNOT00000020894fB4262
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGATGGGGTTCTCGTTCA
R:
CAGAGCAATGCTGACCCCTTG
Band lengths:
300-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]