RnoEX0028628 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9357710-9365713:+
Coord C1 exon
chr20:9357710-9357897
Coord A exon
chr20:9361837-9361951
Coord C2 exon
chr20:9365663-9365713
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGCTC
3' ss Score
11.35
5' ss Seq
ACAGTTTAG
5' ss Score
-15.02
Exon sequences
Seq C1 exon
CTTTGCAAGCTACACTGTTTGTGCGACATCCGGAAACGGGGAAGTTGCTGGTTAACTTTGACCCTAAGATTTTGGAAGTCGTGCGGGAAACAAAGTGCATGATAAAGATGAAGCTAGATGTTCCGGAACAGGCAAAGAAGTTGCTGAAACTAGAAAGCAAACTGAAGGCAGACAAGCTGTATCTGCAG
Seq A exon
CTCAGCTGGCCCCAGACTTGCTATGTAGCTGAGAAGAACCTTGGGCTCCAGATCTCCCTGCTTCTGCCTCTCCAGTGATGAGTTTGAGACCTAAGCCGTCACGAGAGTCCAAACA
Seq C2 exon
GGCCTTCTGCAGTATTACGATGATTTGTGCCAGGAAGTGCCTTCTGTGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.1=100)
A:
PF083857=DHC_N1=PD(1.7=34.6)
C2:
PF083857=DHC_N1=FE(2.9=100)
Main Inclusion Isoform:
ENSRNOT00000000651fB4267
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCAAGCTACACTGTTTGT
R:
GGCACTTCCTGGCACAAATCA
Band lengths:
229-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]