RnoEX0028658 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52531483-52537183:-
Coord C1 exon
chr10:52537009-52537183
Coord A exon
chr10:52532814-52533077
Coord C2 exon
chr10:52531483-52531656
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTGTTTTGAGACAGGGT
3' ss Score
3.56
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
ATTTAAGAAGATAATCCCAGTCCCAGAGCAGAGCATGATCCAGATGCTGTGCTACCTCCTTGAGTGCCTCCTGACAAAGGAGGCTGTCCCTGCAGACTGCCCCAAGGAAATCTATGAACTCTATTTTGTGTTTGCTGCCATCTGGGCATTTGGCAGTTCCATGGTCCAAGATCAG
Seq A exon
GGTCCTCCTCCCTAGTTGAGGCTGGCCCTAAACTCTTGATCTATCTGCCTCCACTTCTGGACTGCTGGGATCACATGTGTGCCACAAGATCAGCCTCCATCCTCGCTTTGAAACAAAAGAAGTCTATCTATAACTTAGAAGACAATAAATGAGAAGTGCCCATCTCCATCAAGATCCAGATTAATTCCTCCACACCAGCCCCATCACTCATCTAGTCTTAGAATGCTCTCTCAGCCCTGCCCTTCCTGGATGTCTCCAACAATG
Seq C2 exon
CTTGTAGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTCAAAACGGTCAAATTTCCTTCCCAAGGAACTGTCTTTGACTACTACATAGACCAAGAGACCAAGAAATTTGAGCCTTGGGGCAAGCTCATCCCCCAGTTTGAATTTGACCCTGAGATGCCTTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Inclusion Isoform:
ENSRNOT00000005583fB4273
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCCTTGAGTGCCTCCTG
R:
GCAAAGGCATCTCAGGGTCAA
Band lengths:
295-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]