RnoEX0029433 @ rn6
Exon Skipping
Gene
ENSRNOG00000015679 | Dok4
Description
docking protein 4 [Source:RGD Symbol;Acc:1310084]
Coordinates
chr19:10568180-10571680:+
Coord C1 exon
chr19:10568180-10568391
Coord A exon
chr19:10571226-10571390
Coord C2 exon
chr19:10571573-10571680
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCAGACCCCTCACTTGTCAGGTC
3' ss Score
5.97
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
Exon sequences
Seq C1 exon
CAGGAGCTGGGCGAAGGAGCCGCTAGAACAATGCTGAGGTGGGGGAGGTGAGGAGTGTCTTAAACAGGTGATCAGGGGAGACCAAGCCACCTGGGCACCCTCCCCGGACTCAGCCCAGCCGGCACCCCAAAGACAGTGGGGCAACCATGGCGACCAATTTCAACGACATCGTCAAGCAAGGCTATGTGAAGATGAAGAGCAGGAAGCTTGGG
Seq A exon
GTCGTTCCTACTTGCCTTCTTCATAGCCACTAGTCTCTGAAACGGAAGAATCAATCGAACTACCTTCAGGAGTGACCCTGATACTGAATTCCACAAATGCTCCTTCTGTTACACAGAGCATCACAGAACAGCTCAATAGAGATGATTGTGAACTTGGCCATTTGG
Seq C2 exon
ATTTACCGGAGGTGCTGGCTGGTGTTCCGAAAATCTTCCAGTAAGGGGCCCCAGCGGCTGGAGAAGTATCCTGATGAGAAGTCAGTGTGCCTCCGAGGCTGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015679-'9-3,'9-2,10-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.5=63.6)
A:
NO
C2:
PF0016924=PH=FE(33.7=100)
Main Inclusion Isoform:
ENSRNOT00000021037fB4405
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCCGCTAGAACAATGC
R:
GGGGCCCCTTACTGGAAGATT
Band lengths:
251-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]