RnoEX0029613 @ rn6
Exon Skipping
Gene
ENSRNOG00000049110 | Dpm2
Description
dolichyl-phosphate mannosyltransferase subunit 2, regulatory [Source:RGD Symbol;Acc:2514]
Coordinates
chr3:11587941-11589255:+
Coord C1 exon
chr3:11587941-11588030
Coord A exon
chr3:11588165-11588261
Coord C2 exon
chr3:11589153-11589255
Length
97 bp
Sequences
Splice sites
3' ss Seq
AGCTTGCTCCAATTTCACAGAAT
3' ss Score
5.48
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCCACCGGGACAGACCAAGCGGTGGGATTTGGCCTTGTCGCCGTTAGCTTGATCATCTTCACCTACTACACCACTTGGGTGATTCTTTTG
Seq A exon
AATCTACACTCTGATGACTGCTGATGGTGTCTGCATTTTATAGATGAGGAGGCTAAGACTCAGGGGGAAGGATATTTCTCAGCCTCTGAACTGCACA
Seq C2 exon
CCATTCATTGACAGCCAGCATGTCATCCACAAGTACTTCCTGCCCCGTGCCTACGCTGTCCTCCTCCCATTGGCCGCAGGCCTCCTGCTGCTCCTGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049110_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
A:
PF072977=DPM2=PD(17.1=75.0)
C2:
PF072977=DPM2=FE(42.5=100),PF085107=PIG-P=FE(42.5=100)
Main Inclusion Isoform:
ENSRNOT00000071505fB4441
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGATTTGGCCTTGTCG
R:
CACAAACAGGAGCAGCAGGAG
Band lengths:
172-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]