RnoEX0029662 @ rn6
Exon Skipping
Gene
ENSRNOG00000030547 | Dpp6
Description
dipeptidyl peptidase like 6 [Source:RGD Symbol;Acc:68402]
Coordinates
chr4:4346625-4362612:-
Coord C1 exon
chr4:4362498-4362612
Coord A exon
chr4:4346959-4347036
Coord C2 exon
chr4:4346625-4346723
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTGAGCATTTCCTCTCAGGAT
3' ss Score
4.56
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
GAGCTGGTGGGGAGTAATCCTCCACAGAGAAACTGGAAAGGAATCGCCATTGCACTGCTTGTCATCCTTGTCATCTGCTCCCTGATTGTCACCTCAGTCATCCTGCTGACCCCAG
Seq A exon
GATGGATATTAAGGTTCTCCCAGGTGTTTTCAGTCAAGATGGAGGAGTGCTGACCCCAGCATCTGCATCCAAATATTT
Seq C2 exon
CGGAAGATACCAGTCTGTCTCAGAAGAAGAAGGTGACTGTGGAAGATCTTTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGGATAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030547_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=FE(52.1=100)
A:
PF059157=DUF872=PD(10.9=38.9)
C2:
PF059157=DUF872=PD(21.9=47.1)
Main Inclusion Isoform:
ENSRNOT00000045773fB4450
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGCCATTGCACTGCTTG
R:
CCACTTTGCCTCTGGGTCATG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]