RnoEX0029914 @ rn6
Exon Skipping
Gene
ENSRNOG00000056258 | Dsc1
Description
desmocollin 1 [Source:RGD Symbol;Acc:1310768]
Coordinates
chr18:11902462-11904273:-
Coord C1 exon
chr18:11904189-11904273
Coord A exon
chr18:11903099-11903260
Coord C2 exon
chr18:11902462-11902664
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTGTTCTAATCTTAGCAT
3' ss Score
6.25
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTCTGGTATTACTTTGCAATGCGTGTCAGAAAGTTTCCCTTCAAGTTCCCTCTCATCTTAAGGCCGAAAAACCTATAGGCAAAG
Seq A exon
CATCACTAGGACTGGCCTATAACTCTGGCCAGCATCAGGAAGGAGGGTCTTACCACATGTCCTTAGTTTGAAAAAGTATCAGTATTAAAGCCTCAGGCTCCAAGTCAGTTCCTACCACGTGCATGTTACTGTCACACTGTCTTGAAGTTGAACCATTCTAAG
Seq C2 exon
TGAATCTGGAGGAGTGTCTCAAATCACCCAGCCTGATCCTGTCCAGTGACCCAGCCTTCAGAATTCTAGAAGACGGCACAATTTATGCAACACACGACCTGCTTTTGTCTTCTGAAAAGAGGGGTTTCTCCATCTTGCTCTCAGACAGTCAAGGGCAGGAACAAAAGAAGCTAGAAATTGTACTGTCAGCAAGAGAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056258-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136171=Lipoprotein_19=PD(76.5=89.7)
A:
NO
C2:
PF087586=Cadherin_pro=PD(71.8=89.7)
Main Inclusion Isoform:
ENSRNOT00000078207fB4488
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATGCGTGTCAGAAAGTT
R:
AGCTTCTTTTGTTCCTGCCCT
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]