RnoEX0030004 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38076236-38094520:-
Coord C1 exon
chr9:38094428-38094520
Coord A exon
chr9:38089428-38090321
Coord C2 exon
chr9:38076236-38076402
Length
894 bp
Sequences
Splice sites
3' ss Seq
CATAAGCAACATGGCTTCAGGCT
3' ss Score
-0.65
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGAAGTTAGTGAACATTAGGAATGATGACATAACAGATGGGAACCCCAAGCTGACGTTGGGGTTGATATGGACAATAATTCTGCACTTCCAG
Seq A exon
GCTGAAGAGGATGGTCACGCAGTCTGCTAGGAATTCCAGATCAGAGCGGAGTCTCGGGACTTGGCGGAGCGGGTCCTGGAAGCCCCGGATTTTGAAATGAGTGAGTTCGTGGAGCCGTGAGTGCCTGTGAATCAAATGGGGAATGTCTGTGGCTGCGTGAGGGCTGAGAAAGAAGAGCAGTATTTCGATCCTGCCAAAAGTCCCTTGAGTCCTGAAAAATACTCTCCGGGAAGAAAGTATTTCAGAAGAAAACCACGCCAGAAAGTTGAGGGTGACACCGAGTCAGTGCGACAAAGCGGAGAAAGAGAAGGCAAGAAGGGTGTTGGTCAGCTTGCGAGGGGACAGCCAGCTGTGTCCTCCGGAGAACTGGTGTGGGAGGACCCTGCTGCAAGCCCCACTCCGGAAGATGGTGTGCAGCTGGGGAAGACAGCCACAGACCACGGTGAACAGAAACCTCTGCCCAGTGTTGGGAACAGCTGCCCCTACCTAGTGGCCGTTTCCTCTGCTCATGGGAGATACTCAGAAGTACAAGTTAGCATCCCGGACAAGACGATTTCAGAAAAAGATAGCCCTCCATATTGCCCGGAGAGGGAGAGACACTTAAATGAAATCAACACAAAACACAGAACATTCCTGAGAAGAAACGACGTTTCTCTTTCCCAAAAGACGTCCAGTTCAAGCCCCATTCTCTGTGCCACAGAGAAATCCCTTGAAAAGACTGTGCTTGTGGGAAACCTGTCAAAAAGCTGCAGCAGTGTCCTGGAACAGGACAGCTCTGGGAGAGGTCACCCTCTCATAGCACACCCTCTTCAGCTCACCAAAAGGAGGTACCATTCCCTCCATGCTACTGTGTCCTCTGTCTCCAAGGACGCACCTGGGGATGACGGGTGCCAG
Seq C2 exon
ATATCTGACATCCATGTCACCGGAGAGTCAGAGGACATGTCTGCGAAAGAAAGGTTGCTGCTGTGGACACAGCAGGCGACAGAAGGTTATGCCGGAGTGCGGTGTGAAAACTTCACTACCTGCTGGAGAGATGGGAAGCTATTTAATGCCATCATTCATAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'15-7,'15-6,16-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.5=100)
A:
NO
C2:
PF0030726=CH=PU(39.2=71.4)
Main Inclusion Isoform:
ENSRNOT00000044452fB4502
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTTAGTGAACATTAGGAATGA
R:
TGATGGCATTAAATAGCTTCCCA
Band lengths:
247-1141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]