RnoEX0030016 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38124298-38149812:-
Coord C1 exon
chr9:38149712-38149812
Coord A exon
chr9:38147721-38147829
Coord C2 exon
chr9:38124298-38124359
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGCTATTTTTCTTTTCGAAGGGG
3' ss Score
6.94
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TCACACGTCCAAAGTTTTACCGCCGTCCCTGAGAGGGAATGGACGTCTTTCCTGACCACTTTGCCCAAGTCATCACCATTGCCTGTATGACTCCTCAGCAG
Seq A exon
GGGCTGTTATCTAGAAGATAGAAATTATGATGGGGGAATCTTCCTATCCTCAGCACTGAGGAGGCAGAAGCAGGCCGATCTCCGAGCTCCAGGCCAGGTGGTCTACAGA
Seq C2 exon
ATGAGCGGGACAAAGTTCAAAAGAAAACATTTACAAAATGGATAAATCAGCATCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'4-1,'4-0,5-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0030726=CH=PU(11.5=61.9)
Main Inclusion Isoform:
ENSRNOT00000044452fB4503
Main Skipping Isoform:
ENSRNOT00000044452fB4509
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGTCCAAAGTTTTACCGC
R:
CTTCATGAGATGCTGATTTATCCAT
Band lengths:
162-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]