RnoEX0032239 @ rn6
Exon Skipping
Gene
ENSRNOG00000013102 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:RGD Symbol;Acc:69266]
Coordinates
chr3:2621536-2622641:+
Coord C1 exon
chr3:2621536-2621655
Coord A exon
chr3:2622267-2622335
Coord C2 exon
chr3:2622507-2622641
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTACCCTCTATTCCCCAGTGG
3' ss Score
7.39
5' ss Seq
GAGGTTTAT
5' ss Score
2.62
Exon sequences
Seq C1 exon
GCCTTTTCTGCTTTCTACTATACTGTGGACTTCCTGACAACAGTGATGGGGCTGCCTGTGGGAACCCTGAAGCAGCTGGAGGAAGCCACAGAGATCACCTGCAACCAGACATGGACTGAA
Seq A exon
TGGCCATCTTTGCTGTCCTCTCCATCCAGCTGTTGGAAGGGGAGAACACAAGGTTCCAGCAGTCACGAG
Seq C2 exon
CTTCAGGCCCGAGTGCCAGGACAAAAGACCCGCCTGGCTGACTACTGTGCTGTAGCCATGTTCATACATCAGCTTCTGAGCCGTGGTTACCACTTCGATGAGCGCTCCTTCAGAGAAGTGGTCTTCCAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013102_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.007
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.1=100)
A:
PF0115012=GDA1_CD39=FE(4.9=100)
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
ENSRNOT00000017829fB4850
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAACAGTGATGGGGCTG
R:
GTGGTAACCACGGCTCAGAAG
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]