Special

RnoEX0032982 @ rn6

Exon Skipping

Gene
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189544020-189546657:-
Coord C1 exon
chr1:189546501-189546657
Coord A exon
chr1:189544330-189544363
Coord C2 exon
chr1:189544020-189544120
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTCCGGAGCTG
3' ss Score
-0.23
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GTTCAAGTTGATGAAGGAGTCCCCCTGAAGATCTGCTTATCTCAGTTCTGTAAATGGATTCATAAGCTTCAGCAGCAGAAGAAAATCAGTTTCGCTACTGGGGACTCAGAGCCTTCTACTCCTGAAGTGAAGCCCTGTGCTTTTGTTACCTGGTCAG
Seq A exon
CTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAG
Seq C2 exon
ACTGGGACTTGGGCGTTTGTCTAGAGTATGAGTGTAAAAGAAAGCAGCTATTGAAACCTGTGTTCTTAAATTCTTGGATCGATCTCAGAGCAACTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

In the CDS, with uncertain impact

No structure available
Features
Disorder rate (Iupred):
  C1=0.066 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0092919=RNase_T=PD(40.4=83.0)
A:
NO
C2:
PF0092919=RNase_T=FE(17.5=100)


Main Inclusion Isoform:
ENSRNOT00000019747fB4969


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGTGCTTTTGTTACCTG
R:
AGTTGCTCTGAGATCGATCCA
Band lengths:
121-155
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]