RnoEX0033004 @ rn6
Exon Skipping
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56820117-56829459:+
Coord C1 exon
chr3:56820117-56820209
Coord A exon
chr3:56824143-56824276
Coord C2 exon
chr3:56829278-56829459
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGCTTTAATGGTTAGAAA
3' ss Score
4.09
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GAAATCCTCCTTTGGACGGAGACCAAGATTGTCCAGCAAGCTTTGTACTTCTCCAACACAGATCCCGGGTGGAGCTACTGTGTTCTCAGCAAG
Seq A exon
AAAAGAAACCTCTTCAAAGAAGATTGAAGATAAAGTCTCTTTGAAAAGCAGTGAAAACAGACCTTCTTCAAGGAGTATTGAAACAAACCGGCAGTTCGACCTCTGGTCATCTTCCTTCCTAAAAGAAAGCTCAG
Seq C2 exon
GTGAAGTGAACAAGGATTTGGTCCTTGCAAAGCAAGAGAAAAATAGTGAGTATTGCCTTGAAGACATTGAGGAGAACTTGTCAGACTCAACGGATGGTGATGGCGAAGAGGACAGCAACAACGAAGACGACGAAGGCCCCGCTAAGAAGGAGACTCGAGCCCCACTGGAGCTAATGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=0.565 C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCCTTTGGACGGAGACC
R:
TCGAGTCTCCTTCTTAGCGGG
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]