RnoEX0033404 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2955853-2960581:+
Coord C1 exon
chr14:2955853-2955913
Coord A exon
chr14:2956862-2956970
Coord C2 exon
chr14:2960528-2960581
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGGCGCTCTGTGTCTTGCAGGAG
3' ss Score
10.17
5' ss Seq
TTGGTGCGC
5' ss Score
4.77
Exon sequences
Seq C1 exon
ACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAGCAAGGTGAAATTAAA
Seq A exon
GAGTTGGCTCCCTTCCTTAGACTACCATGTCTGCCCCAGAGATGCTGGCAAGTGCCTTTGCAGACAGCCCACCTCTCCGCCTCAAGCCTAGGATCCTTATGAGCCCTTG
Seq C2 exon
AGGTTACGCACAGAAAACAGGCTTTTAAAACAGCGCATTGAAACACTAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'37-33,'37-32,38-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000061630fB5042
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTAAAGAAATGGAAGAGCAAGG
R:
TTTTTCTAGTGTTTCAATGCGCTGT
Band lengths:
90-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]