RnoEX0033417 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2953710-2955913:+
Coord C1 exon
chr14:2953710-2953807
Coord A exon
chr14:2954275-2954420
Coord C2 exon
chr14:2955853-2955913
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGACATGGCTCTCCTCACAGTCT
3' ss Score
8.02
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CACTTCCAGAAGGTCATTCCACATCAGTTTGATGGTGGCCCAGAAAAATTAATCCAGTCAGCTTACCAAGTCAAATACAACTCAAAAAAAATGAAAAA
Seq A exon
TCTGCCCCAGTGTTACCTCCGTGCCTGCAGCACAGCCAACCAGCAGCAAGGATGAGAGATGTTTAGATTCTCATCTCATTTCCAAGATGTTCAAGATGCTCAGACTCAGTTCCTGCCTTAGACCTTTTCTCTGTCTTAAAAGTAAG
Seq C2 exon
ACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAGCAAGGTGAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039_MULTIEX3-1/6=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.142
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000061630fB5045
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCCAGAAGGTCATTCCACA
R:
TTTCACCTTGCTCTTCCATTTCT
Band lengths:
154-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]