RnoEX0034189 @ rn6
Exon Skipping
Gene
ENSRNOG00000010019 | Fam166a
Description
family with sequence similarity 166, member A [Source:RGD Symbol;Acc:1562762]
Coordinates
chr3:2434999-2437078:+
Coord C1 exon
chr3:2434999-2435141
Coord A exon
chr3:2436564-2436623
Coord C2 exon
chr3:2436994-2437078
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGTGTCTGTGTGTAGGTT
3' ss Score
11.47
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CACTGGCCCTGACTGATACTTTTCTGGATAGACGGATGGAGACATGAGGAAACAAGTTTGATTTGAACAAAGGGACCACAGGCTGCCTGGAGCCTCCTCCTACACTGTGCAGTGTCCTTTGAGAACGAATTGATGGTATTAAG
Seq A exon
GTTTATGTACTTGAGTGCAGATGCTCAGAGGCCAGGCCTGTTGGCAGTTGGGAAATACTG
Seq C2 exon
AACCCACAAGGTGAAAGAGATAACCAGCTCCCCAAAAGTTGTCATCTGACCCCCACAGGAGTGCTACAGCACGTGTATACACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010019_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACAAAGGGACCACAGGC
R:
TGTGGGGGTCAGATGACAACT
Band lengths:
138-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]