RnoEX0034618 @ rn6
Exon Skipping
Gene
ENSRNOG00000061348 | Fam53b
Description
family with sequence similarity 53, member B [Source:RGD Symbol;Acc:1310799]
Coordinates
chr1:204780455-204817080:-
Coord C1 exon
chr1:204816835-204817080
Coord A exon
chr1:204816355-204816679
Coord C2 exon
chr1:204780455-204780713
Length
325 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTGTCTCCTTGTTAGGCG
3' ss Score
8.18
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
AGTTCACGCAGCCGCGGTCGGGCGGCCCGGCAGCGGCGGGCACAGGCGGCCTGACCGAGGTCGGTAAAGGGACGAGTTGCAAACAGTTCATGAAGTGACAAGTCTATTTCCTCCTCTCCCGGGTAGTCGCTCGGTACAAAGCGCTCGGCGTCCGGCAGGAGAGCGTGCGCACGGTCGGACGCGGGCGGGCAGCTCCTGGGCGACTTGGCGAGCGCTAGCAGTGTCGGCCCGCGTCCGGCGCGCACA
Seq A exon
GCGGCGGATCGGGTGGTTTCTGCCGGCGCCGTCTCTTGCTCGCCCCGGTGCAGGTCGTGAGACTTGTCAGCACGCTGGCGGGGGAAGAGCAAACCTAGCGCTGCAGACAAAGTCTGCGCTCGGCGGGTCCCGGCGAACGGCCGTGGAGACGGCTACGTCCGGGGCAGCCTCTACCTTTGAGGCTCAACTCGAGCCCTGGCTGTGGCAGCAGCGAAGGCTCTGAGCCCCTCTTTTGTTCACGGAAGTTTACACCCGCCACCCCTGGGATGCGGGCGCGCAGGGACGACTCCAAGGCTGCTGACTGACCCGCGCGGTGTCGATGGGG
Seq C2 exon
GTTGTTGACTTCTTTTGGCCCTTCCCAGAGGGCCTTGTCACCAGTCTGAGCAACTGATGGGGAGCTGTTTCCGATGACATCACTCCCCAGGATGCTCAAGTATCACTGTTAATCAAGTCTGCCCACCTGAAGATGGCCTGTACCCAACCTGGGATGCAGCCCAGTGCCTGAGGTCCTTACCATGGTGATGATCCTAAGGAGAAGCCTCATCAACCAGGGAGCTGACTCTGTAGCACACAGGACCTTCATCCCTGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061348_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.154
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF152421=FAM53=PU(43.9=96.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGTCGCTCGGTACAAAGC
R:
TCCCTGGTTGATGAGGCTTCT
Band lengths:
345-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]