RnoEX0035016 @ rn6
Exon Skipping
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55946592-55949854:-
Coord C1 exon
chr3:55949786-55949854
Coord A exon
chr3:55948766-55948913
Coord C2 exon
chr3:55946592-55946717
Length
148 bp
Sequences
Splice sites
3' ss Seq
ATGGAACCCTGGTGTCACAGGCA
3' ss Score
2.28
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTTTGCAGTTGAATCCCATCACCCACTAATTGAGGCCCTGGTCACAGAAGGGTGGCGAAGACTCGAAAG
Seq A exon
GCATTCATGAACGAGGTGCTTTGACTCTTGAAGAGTTCTGCTTCAGAAACAGAAGATTCTGATTGATATAAAACAAACAAACAAACAAGCAAGCTTAAATATCGGGGTTGAAAAGGTGGCCTGGCAGGAGATTCCTAGCACCCACATG
Seq C2 exon
GTTCGATATTAATGTGCTGTCAATATTTTCCACTTGCCTGGCCGATCAGCACTTGTATTTTAGTCCATTAATGGGAAAAATAGCTGACATTGTGAATAGGAAACTGGAAGCCATACAGGACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000036585fB5372
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCAGTTGAATCCCATCACC
R:
TTAAGTCCTGTATGGCTTCCAGT
Band lengths:
194-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]