RnoEX0035228 @ rn6
Exon Skipping
Gene
ENSRNOG00000018986 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:RGD Symbol;Acc:1310989]
Coordinates
chr1:199193669-199196376:+
Coord C1 exon
chr1:199193669-199193769
Coord A exon
chr1:199194121-199194317
Coord C2 exon
chr1:199196276-199196376
Length
197 bp
Sequences
Splice sites
3' ss Seq
ACCCGCACTGATTCCCACAGGTG
3' ss Score
8.7
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGCTGGGCTGAAAGGGATCTCGAAAAAATAACCGCTGCCACATGCCCCGTGCCAGAACTGGTTACTTTCTTGAACACTTTTAACCCTAATTCTGCCTGGAG
Seq A exon
GTGACATCAATTCTCCGCCACCGGAGAATGAAAGCTTGGGACTACATTTCCCTGCAAGCCCTTTAGAAAAGGAGGCCAAGAGCAAAGAGACTTTCCGTTTCCGTCCGCTTGCAATTTGGCGTGTTCGCAGTGATACATATTTCAACAGTAGCGTCCTTTCTCTGTACAACTAAAGCAGAGACTACATACCCCAGCAG
Seq C2 exon
GGAAGTGGCCTTCCTTCCCCGACCCTGCTGCCCCTTGCAGACCTCCCCGTCCACCCCGCCTCCAGTCGCCGCCCTCTAGGCCCCTCCCCCGGAGTGCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018986-'0-1,'0-0,1-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTGAAAGGGATCTCGAA
R:
GGGGAGGGGCCTAGAGGG
Band lengths:
187-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]