RnoEX0035231 @ rn6
Exon Skipping
Gene
ENSRNOG00000018986 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:RGD Symbol;Acc:1310989]
Coordinates
chr1:199196059-199197430:+
Coord C1 exon
chr1:199196059-199196119
Coord A exon
chr1:199196276-199196565
Coord C2 exon
chr1:199197230-199197430
Length
290 bp
Sequences
Splice sites
3' ss Seq
CCTATAACCTCCAACCCTAGGGA
3' ss Score
6.57
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGGCCGCCGACCCGCCGGGAGCTGCCGAGAAGGGAGAGATGGCTCCCGGGACACGTGTGAG
Seq A exon
GGAAGTGGCCTTCCTTCCCCGACCCTGCTGCCCCTTGCAGACCTCCCCGTCCACCCCGCCTCCAGTCGCCGCCCTCTAGGCCCCTCCCCCGGAGTGCTGGAGGGCCCCATACCCTGTGGATGGTCTGGAAGTCCTTGGAAAGGGAGACGCCAGGGGGAAGCAGGTCTAAGACTGATTGGGAAGAGACCCCCTCCAGGCTTGCTGAGTCCATGTGGGATTTCAGAGGATCTGGTTTCCATGGGCAGGAGAGCCCCAGGGATTCCAGACAATTAGGGATGAAAAGCAGCCTG
Seq C2 exon
CCTTCGGCGTTGCTGACGCCCCCAATGTCGTCGAGCAGCCGGGGACCGGGGGCCGGAGCGCGCCGACGCCGAACCCGCTGCCGTCGTTGCCGGGCCTGTGTTCGAACTGAGTGCGGGGACTGCCATTTCTGCCGAGACATGAAGAAGTTCGGGGGGCCCGGGCGCATGAAGCAGTCGTGCCTGCTTCGGCAGTGCACCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018986_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.153
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0200815=zf-CXXC=WD(100=79.7),PF0013017=C1_1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGAGCTGCCGAGAAG
R:
CCGAAGCAGGCACGACTG
Band lengths:
236-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]