RnoEX0035533 @ rn6
Exon Skipping
Gene
ENSRNOG00000020583 | Fcgrt
Description
Fc fragment of IgG receptor and transporter [Source:RGD Symbol;Acc:61811]
Coordinates
chr1:101087423-101094509:-
Coord C1 exon
chr1:101094234-101094509
Coord A exon
chr1:101088582-101088851
Coord C2 exon
chr1:101087423-101087539
Length
270 bp
Sequences
Splice sites
3' ss Seq
CATTCCCTGTGTCCCCACAGAGC
3' ss Score
11.93
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GGACCTTCACACTGCAGGGCCTGCTGGGCTGTGAACTGGCCCCTGATAATTCTTCATTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTCATGCGGTTCAACCCAAGAACGGGCAACTGGAGTGGGGAGTGGCCGGAGACAGATATCGTTGGTAATCTGTGGATGAAGCAACCTGAGGCGGCCAGGAAGGAGAGCGAGTTCCTGCTAACTTCTTGTCCTGAGCGGCTGCTAGGCCACCTGGAGAGGGGCCGTCAGAACCTGGAGTGGAAGG
Seq A exon
AGCCGCCATCTATGCGCCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCAGTACTGACCTGTGCTGCTTTCTCCTTCTACCCGCCGGAGCTCAAGTTTCGATTCCTGCGCAATGGGCTAGCCTCAGGCTCTGGGAATTGCAGCACTGGTCCCAATGGTGATGGATCTTTCCATGCATGGTCATTGCTAGAGGTCAAACGTGGAGATGAACACCATTACCAATGTCAAGTGGAGCATGAGGGGCTGGCCCAGCCTCTCACTGTGGACCTAG
Seq C2 exon
ATTCGCCCGCCAGATCTTCTGTGCCTGTGGTCGGAATCATTCTTGGTTTATTGCTGGTGGTAGTGGCCATCGCAGGGGGTGTGCTGCTATGGAACAGGATGCGAAGTGGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020583-'8-7,'8-5,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.231 C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(50.6=94.6)
A:
PF0765410=C1-set=WD(100=87.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTTCATGCGGTTCAACC
R:
CCACTTCGCATCCTGTTCCAT
Band lengths:
298-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]