RnoEX0036532 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226741966-226744594:-
Coord C1 exon
chr2:226744494-226744594
Coord A exon
chr2:226743717-226743998
Coord C2 exon
chr2:226741966-226742081
Length
282 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCCCAACCAAAAAGAGC
3' ss Score
0.9
5' ss Seq
CAAGTAGGC
5' ss Score
5.3
Exon sequences
Seq C1 exon
TGACTGGAATTTTTCTATTCTGCTACTAGACCTGTGCTTTGACTGGAGTTTAAAAAGGAAGTTGAAATGATGTTGAAATTTATTCACTTTGTTATTTATAG
Seq A exon
AGCCAAGGACCAGATGAGTTCAGTGCAGAATTCTATCGGACCTTCATAGAAGACCTCATGCCAATACTGTCCAAACTATTCCACAAAATTGAAACAGATGGAGCACTACCGAATTACTTCTATGAAGCCACAATTACTCTTATACCTAAACCACACAAAGACCCAACAAAGATAGAGAACTTCAGACCTATTTCCCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTTGCAAACCGAATCCAAGAACACATCAAGACGATCATCCATCATGATCAA
Seq C2 exon
GATCAGTTCGATAGCTTAGATAAGCATACCCAATGGGGAATTGACTTCTTGGAAAGATACGCCAAGTTTGTTAAAGAGAGAATTGAAATTGAACAGAACTATGCGAAACAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'7-4,'7-3,8-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007822=RVT_1=PU(57.5=48.9),PF0061118=FCH=PU(7.5=7.4)
C2:
PF0007822=RVT_1=PD(40.0=82.1),PF0061118=FCH=FE(40.9=100)
Main Inclusion Isoform:
ENSRNOT00000055669fB5646
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGAATTTTTCTATTCTGCTAC
R:
TTGTTTCGCATAGTTCTGTTCAA
Band lengths:
212-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]