RnoEX0036858 @ rn6
Exon Skipping
Gene
ENSRNOG00000034011 | Frg2
Description
FSHD region gene 2 [Source:RGD Symbol;Acc:1592623]
Coordinates
chr14:85791159-85792257:+
Coord C1 exon
chr14:85791159-85791240
Coord A exon
chr14:85791490-85791552
Coord C2 exon
chr14:85791821-85792257
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATCCCACAATCCCATTTCAGCTC
3' ss Score
7.28
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCTTTAGAATCAGAACCAAATAAAAATGAGCGGACCCCCAGTCAATCAGACAGCAATTCCAGTAACCACACTGAAGAATCAA
Seq A exon
CTCAGAAGGAAGCACCCAGGAAGAGGAAACACTCTTCCAGGGACTCCAGCCAGGTCAGGACAG
Seq C2 exon
GAAGCGAGGGCAGCTCCCATGGGAAAAAGAGACACAAGACTTCGGAAACAAAGGCTGAGCCAAGAGCCAATGGACACCAAGATGGATTATCCCATCGCCCTCAGCACACAGACCCATTACCAATTCGGAAGAACCTGGTGAGCTTTCTGCGGGAGAAGTCTGAGGAGATTTATAGAGACACAGTCCAGATGCAGGCCCAGCAGCATGGTTCCCTGCTCAGCCCTGAGCAGCTCTCTCAGCTCAGCCAGCTCTCAGGTTCTCTGACTGCCGTGGTGCACACGTTCTACAGCATGGCCACCCAAGCAGGCTTTGCCTTCCCTGCTGAGGGCTGGCTTATCCCAGGCACCATGCCTGCCCCTCAGGAGCTGTCTGGCAAGGAACCTCAGAGTCCTTTGGTGGAGGGAGGAGAGAAGACCACAGACTCTGCCAGCCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034011-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.808
Domain overlap (PFAM):
C1:
PF153151=FRG2=PU(15.8=89.3)
A:
PF153151=FRG2=FE(13.3=100)
C2:
PF153151=FRG2=PD(70.3=76.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAATGAGCGGACCCCCAG
R:
TTGGTGTCCATTGGCTCTTGG
Band lengths:
142-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]