RnoEX0037965 @ rn6
Exon Skipping
Gene
ENSRNOG00000007359 | Gca
Description
grancalcin [Source:RGD Symbol;Acc:1306589]
Coordinates
chr3:48655014-48658653:+
Coord C1 exon
chr3:48655014-48655161
Coord A exon
chr3:48655965-48656039
Coord C2 exon
chr3:48658540-48658653
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTTTCCTTACACAGTGT
3' ss Score
8.93
5' ss Seq
GATGTAATT
5' ss Score
1.96
Exon sequences
Seq C1 exon
AGAGACTACACAGGAAAAATGGGATTCAACGAGTTCAAGGAGCTTTGGGCAGCTCTCAATGCCTGGAAGCAGAACTTCATGAGCATTGACCAGGATCAAAGTGGCACCGTAGAGCATCATGAGCTGAGTCAAGCCATCGCGCTCATGG
Seq A exon
TGTAGGACACGAGTGGCAGCAGGTCCTGACAAACTTCAAAGTGGAAAGAGTGCACTTCAGATTAGTTTAAAAGAT
Seq C2 exon
GTTACAGGTTGAGTCCACAGACATTAGCAGCGATTGTTAGACGCTACAGCAAGAATGGCCGGATTTTCTTTGATGACTATGTCGCCTGCTGTGTGAAGCTCCGTGCCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007359_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
A:
NO
C2:
PF134991=EF-hand_7=PD(50.0=76.9)
Main Inclusion Isoform:
ENSRNOT00000009697fB5894
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAAGGAGCTTTGGGCAG
R:
GCCATTCTTGCTGTAGCGTCT
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]