RnoEX0038233 @ rn6
Exon Skipping
Gene
ENSRNOG00000011353 | Gfi1b
Description
growth factor independent 1B transcriptional repressor [Source:RGD Symbol;Acc:1311727]
Coordinates
chr3:7198461-7202848:-
Coord C1 exon
chr3:7202730-7202848
Coord A exon
chr3:7199831-7200005
Coord C2 exon
chr3:7198461-7199365
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCTTCAGCTA
3' ss Score
12.74
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AACTGCCCTCTGCCAGGAACTCAGACGGAATTGGTGTCTCTGACAACCTCAAAAGTTCCTGGAAGCACCGGGGAGTCAGACACCCTCTCCTAAGGAATTCACTGAAGGGGAGTGACAAG
Seq A exon
CTAACAAAGACCAAAAGGAAATTCTCTGGGTACAGTTGGCTACTGTAGGCTTGGGGGTCTGACGAAGTGTCAGCTATCCTGCCCTAGAAGGGCAAGGATAGAGCTAAGGCAACCCAATGGGAGGAAGCCAGAAACCCAGGACCTCTTTCTTCCTGTTGTAAGCATAATGCATTCA
Seq C2 exon
TGACTGTCTCAGTGAGGACCTGACATGAAAGGCCTGGAATAGCCTGTGGCACATGGACCACGCTGAACAAATAACCTTTGTCCCAGTGCTGTGAGTATGGAGGTCCTGGGCCTAGATATATGCATGCACTCTCCTTCCCCCTGCTCAGGATTAAGAGTCCCTCAAATGAAGGGTTGGGGAGATTTGGGGACTGGGGTGGGAGGGAGAAGGCCAGGAAGGGAGGGGGCAGGGGAGGAAGGCTGGCCCTGGAAGATAAGGTCGTGGCCGCTGTGTGTACCAGAATGAGCAGAGGCCCTTCCAATCCTTTGTTTAGAGAACTAAGAATCTGTCAGTGGAAGAGACCCAAGAGGCCAAGTCCCATCCTTCATTTTAGAGTTCAGAGAACGGAGGGCATTGAACTTATGGCAGCTCTCTGGTTTATCCTTAGAGGGCACCTGCTGGATTGAGCCTAGCCTCCCTCCTGGCCCCTTCAGCTTTTCCTCAGCCGGTGGAGAGGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011353-'1-2,'1-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTTCCTGGAAGCACCGG
R:
CCCCAACCCTTCATTTGAGGG
Band lengths:
248-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]