RnoEX0038373 @ rn6
Exon Skipping
Gene
ENSRNOG00000019179 | Ggta1
Description
glycoprotein, alpha-galactosyltransferase 1 [Source:RGD Symbol;Acc:629476]
Coordinates
chr3:14637115-14640188:-
Coord C1 exon
chr3:14640153-14640188
Coord A exon
chr3:14637968-14638033
Coord C2 exon
chr3:14637115-14637216
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTTATTATTCATTTCGTAGAAT
3' ss Score
7.96
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TCCAGAAGGCTCTTTCTTGTGGATATATTACACAAA
Seq A exon
AATTCCAGAGGTTGGTGAGAGCAGGCGCCAGAAGGTCTGGTGGTTCTCAAGCTGGTTTAACAATGG
Seq C2 exon
GACCCACAGTTATCAAGAAGAGGACATAGAGAGAGCGAGAGAAAAGGGGAGAAATGGAGACAGCATTGTAGAGCCTCAGCTCTGGGACTGGTTCAATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019179-'9-8,'9-7,10-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.181
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(0.1=0.0)
A:
PF034148=Glyco_transf_6=PU(6.6=95.7)
C2:
PF034148=Glyco_transf_6=FE(10.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAGGCTCTTTCTTGTG
R:
GGATTGAACCAGTCCCAGAGC
Band lengths:
135-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]