RnoEX0038471 @ rn6
Exon Skipping
Gene
ENSRNOG00000051563 | Giot1
Description
gonadotropin inducible ovarian transcription factor 1 [Source:RGD Symbol;Acc:620184]
Coordinates
chr7:13104481-13108723:-
Coord C1 exon
chr7:13108597-13108723
Coord A exon
chr7:13108330-13108390
Coord C2 exon
chr7:13104481-13106254
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGTACTATATTTTAGGCT
3' ss Score
7.95
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GATGCAGTCACCTATGAGGATGTGTATGTGAGTTTTACTCAGGAAGAGTGGGCTTTGCTGAATCCTTCCCAGAAGAATCTCTACAAAGATGTGATGATGCAAACCTGCAGGAACCTCATTGCTATAG
Seq A exon
GCTACAAATGGAACAGTCAGAATATTGAAGAACATTGTCAAAGTTCTGGAAAACACAAAAG
Seq C2 exon
GGATATCATCTGCCACTCAGGATACAAGCCATTTGAGCATAAGGACTATGGAAAGATGCAGTTTACCTCTCTTTCTCCAACAACAGTTAGAGGATATATGAATAGATTTCATGAATATGACATGAATTTACAAGCACTTGGTGTTCCAACTACAGTGGGAATGCATCAACAGACTTACAATGGAGAAAAGTCTTATGAGTACCAGGAATATGGGAATTCATTTGTTTATCCGAGTTCACTTTGCATATGTAGCGTGAATCACACTGTAAGAAAATGTTATAAATGCACTCAGTGTAGTAAAGCTCTGAGTTCTCTTCAAAGACATGAAAAAACTCATCTTGGAAGAGGAATTGATAAATGTGAGCCATGTACTAACCATCACACGTATTTTCAAGCACACAAAAGAACCAATAATGAAGAGGATACCTATGAATATAATCTATGTGATAAAGCCTTTAGATCTGATTCTTCCTTACACCAAAGACCTCATTTGGAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051563_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGTGGGCTTTGCTGAA
R:
AGTCCTTATGCTCAAATGGCTTGT
Band lengths:
133-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]