RnoEX0038684 @ rn6
Exon Skipping
Gene
ENSRNOG00000021765 | Gli4
Description
GLI family zinc finger 4 [Source:RGD Symbol;Acc:1560906]
Coordinates
chr7:116673192-116675170:+
Coord C1 exon
chr7:116673192-116673344
Coord A exon
chr7:116673749-116673845
Coord C2 exon
chr7:116675075-116675170
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCAGCTGTGCTCTGTGTCAGGCT
3' ss Score
4.09
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCCCAAGGTGCCTCCTTGAGCAGGACTCAGGAAGATGGCTGCACTAGAGGGTGTAGAGGAGGCCCCTCCTGTCTTATCACTCAACAGTCTCTCATCACCAGGGACACCTGGAGACCAGCACCATGTGGCACTCCATGGACACCCTCACCACG
Seq A exon
GCTCCCTTAGGTGATGCCCAAGCTTATAGACGGACATTCACGGATGAGGACAGACATCACACTTCCCTGGGGAACCACGGGGTCAACCCCAGACCAG
Seq C2 exon
GCTCTCCCTGTTCCAGCCCTGAGGTGCCTTCCCAGACAGCAGACCCAGACCTCCGAGTCGTAGAGGAAGTGGAGAGCACCAGAGATACCTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021765-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000029711fB6014
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCTCCTGTCTTATCACT
R:
TCTGGTGCTCTCCACTTCCTC
Band lengths:
175-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]