RnoEX0039163 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23308955-23311728:-
Coord C1 exon
chr3:23311578-23311728
Coord A exon
chr3:23310995-23311137
Coord C2 exon
chr3:23308955-23310218
Length
143 bp
Sequences
Splice sites
3' ss Seq
GAGATGTGTCCATCTCATAGGTT
3' ss Score
6.54
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
ATGTCTTGGTTTGGATCCAAACCAGCTCCCAAGGGCAGCATCCGGCCATCTATCTCCAACCCTCGGATACCATGGTCCTAGACCCACCCAAGGATAGAGCTACGTGGGCTGACACTCTTCCTATGAAAAGAATACTGACACAGCAGACTGG
Seq A exon
GTTACGGGGCCAGTGTGGACTGATGAGTATGCAACTTTCCAGTCCTGAGAAAACTAGCAAGCAGACGGAATGATCTCTACGTATAGCACCAAATACACTCAATTGCCTTCTTAATGAATGTACTCGTCTTGGATGGGTTGCTG
Seq C2 exon
GGTGCCACTTCCCATTTAGTGGGACATGAAACCAGAGCCCCACTGTTGATTTTACAGAGGAAGAAGTAGCTTCTCCAAGTAGGATTACTTCCCTTCCTCCTGTCCCAGGTAAGAAATCCCAGAGGACTGAGCAGTCCAGGCAGCTGCAGTTCCAGCTGTGGAAGCCCTTTCTACACCTGAGGTTTCTCAGGCCCATGATCTGATGTGTCTGTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCACACACACACACACACACACACACACACACACACACACACACACACACACACACCTCTGCCTGCCTGCAGGTTGCGGTGTGACTGTGGGGCCCACTTATTTAGAATGGCTTTCCTGCTGCATGTTGAGCTCCTCCAGTACTAGAAGAGTGCAGTAGCCATTCAAGTGGCTTCATGCACTTCTATAAACTTCGGTAAGAGACAGTGTGTAGCCCTTTATATATGAGCACTGGACTGTGATCTTACTACCAATGTAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAGAGCTACGTGGGCTGA
R:
TCATGGGCCTGAGAAACCTCA
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]