RnoEX0039215 @ rn6
Exon Skipping
Gene
ENSRNOG00000017956 | Golga7
Description
golgin A7 [Source:RGD Symbol;Acc:1359725]
Coordinates
chr16:73564243-73570489:+
Coord C1 exon
chr16:73564243-73564570
Coord A exon
chr16:73566823-73566900
Coord C2 exon
chr16:73570337-73570489
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACTCCCCTGCCTGTTACAGTGT
3' ss Score
7.47
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GCCGAACCAGGATGTCGGGGGGCGCGGGTCCTGGGCTTGGGTAGCTGGAGGCTCTCAGCTACAGCCATGAGTGAAGGGGATCGGCGAGGGGGAGGTCTTGGGCATCTTTGGGCGGTGGGTGGCTCCGAAGGGCAGGCGGGCCCGAGAGCCGGCTCTAGGCCGGCAATCTGACCTGTGTCTTGCCCGAACTCGCAGAGCGGCGGGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCGCCGGTGTCCGGGAAGGTCTTCATTCAGCGAGACTACAGCAGTGGCACCCGCTGCCAGTTCCAGACCAAGTTCCCCGCGGAGCTGGAGAACAGG
Seq A exon
TGTGATGCTTCGATGCCTGAGAGCCCAGCTGCCTCAGTAGTTCTTCAGGTGAACCTGTGTTGTCCTTTTAGCCAACAT
Seq C2 exon
GTTGATAGACAGCAGTTTGAAGAAACAGTTCGAACTCTAAATAACCTTTACGCAGAAGCGGAGAAGCTTGGGGGCCAGTCATATCTTGAAGGCTGTCTGGCCTGTTTAACAGCATACACCATCTTCTTATGCATGGAGACTCATTACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017956_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.6=70.3)
A:
PF102564=Erf4=FE(17.7=100)
C2:
PF102564=Erf4=FE(43.5=100)
Main Inclusion Isoform:
ENSRNOT00000030960fB6105
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGAAGGTCTTCATTCAGC
R:
TCAAGATATGACTGGCCCCCA
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]