RnoEX0039701 @ rn6
Exon Skipping
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3791278-3794359:+
Coord C1 exon
chr3:3791278-3791486
Coord A exon
chr3:3792199-3792416
Coord C2 exon
chr3:3792886-3794359
Length
218 bp
Sequences
Splice sites
3' ss Seq
ATCAATGTTCATTCTCACAGAGG
3' ss Score
6.79
5' ss Seq
TTGGTGGGC
5' ss Score
3.03
Exon sequences
Seq C1 exon
CTCAGCCCTCTGTAACAGCTTCACCACAGACTGAAGAGTTCTTTGACCTCATTGCCAGCTCCCAGAGCCGCCGGCTGGATGACCAGAGGGCTAGCGTAGGCAGCCTGCCTGGGCTTCGCATCACCCTCAACAACGTGGGGCACCTCCGAGGCGACGGGGACCCCCAGGAGCCAGGGGATGAGTTTTTCAACATGCTTATCAAATACCAG
Seq A exon
AGGAGAGAGAACCACAGCAGCATCCAGACAGCCTCCTCTAAGCCAGCCCCTCCAGAGAAGCCTTACCCACTCAAATACCTGGGCCATCAGCTGCACCAGCTCCACTCCCATCTGCTTCGGGTCCTGAAGAGAAGCCAACACCTTTCAGGCCCCCCAGCCTCCACATCAGAACAGGCAGAACCTGTGGTGTCGGCTGATTGATCCAAAGGAGACCCTTG
Seq C2 exon
TCCTCCAGGATTGATGACCAGCGCTGTCCACCCCCTGATGTGCTGCCCCGAGGCCCCACCATGCCTGATGAGGATTTCTTCAGCCTTATCCAGAGGGTGCAGGCTAAGCGGATGGATGAGCAGCGTGTGGACCTGGCTGGGAGTCCAGACCAAGAGGCCAGTGGGCTGCCTGATCCCCGGCAGCAATGTCCGCCAGGTGCCAGCTAAGGCCTCACCCCTACAGCCAGCCATGCCCTACTCTGGACTCTGTAGGCTCACAGTTGTCCACAGTGGCCATGACCCCCCAGTAAGCCAAATCCTCCCAAGGCCATGATGGAGAGCCAGCTCAGCCCCAACCCCTTCCTCCCACTGAGCCAGATGGTGGGCACACACCCCTCAAGAACCCCCCACCCTAGGTGGTGGGCTCAGGCTAGAGCTGCTGTATGGGGGAGGGCATGCTTCTGTCCCCATATGATCCACAGCTTAACTGCAGGCCCTGCCCTGCCCTGTCCTGCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=0.788 C2=0.926
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=32.9),PF0218812=GoLoco=PU(47.8=15.7)
A:
NO
C2:
PF0218812=GoLoco=PD(43.5=14.5),PF0218812=GoLoco=WD(100=33.3)
Main Inclusion Isoform:
ENSRNOT00000067840fB6193
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACCTCATTGCCAGCTCC
R:
GCTGCTCATCCATCCGCTTAG
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]