RnoEX0040220 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10452828-10456693:-
Coord C1 exon
chr4:10456611-10456693
Coord A exon
chr4:10455204-10455304
Coord C2 exon
chr4:10452828-10452881
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTATTATTTTTGTTTTGAGACA
3' ss Score
-0.07
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
CGTCCTCCTATTGGAGTGTGTATCCAGGGCTGGATGACGTGGACCTGCTCTTACCCTACTCCTCTGTGCTGACATGGGACACA
Seq A exon
ACATGGTCCCATATAACCCAGCCTGACCTGCTTCAAATGCCTGTGGAGCTGAGGACAACCTTAAATCCCGGATCCGCCTGCCCCAAGTCCTGGGACTGCAG
Seq C2 exon
GAAATTCCTGGAATGAAGCTTGTGACAGAAGAGCTCCCGTTACCTCTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'21-30,'21-29,22-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000083964fB6266
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTGGAGTGTGTATCCAGGGC
R:
CTTCATAAGAGGTAACGGGAGCT
Band lengths:
130-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]