RnoEX0040383 @ rn6
Exon Skipping
Gene
ENSRNOG00000031038 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:RGD Symbol;Acc:1563393]
Coordinates
chr3:29410426-29416494:-
Coord C1 exon
chr3:29416403-29416494
Coord A exon
chr3:29414163-29414233
Coord C2 exon
chr3:29410426-29411532
Length
71 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTGCCATTGGACAGCTC
3' ss Score
4.5
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CTGAGTATCTGTATTCCACACCTGAACAGCTTTCAAAAAGGCTCAAGAGTTTCTGTGAGAGACCAGACATTATAAGAAAACATCTTTATAAG
Seq A exon
CTCTGGACAGATTGTCACTGGATTCCTCAATTTCTTTCTTTTATGGTTTACATCTTTTCTTATTGTTAAAG
Seq C2 exon
GGTGAAGTGGCTCCATTTTCTTGGGCAGCCCTACATGGTAAATTCAGGTCTCTGCTCACAACAGAACCCAGGGAAGATTTGTGACAGATGGGGCTAAGTCGCAAACTTGCAGCCTAAGGCAGAATCTGAAGAACTTTCCAGAGTGTGCCCATATTTACCTGATCAGAGAGAAAAGAAAATCTGCAGAGGAAGCCGAGCCTGGCTGCTTGTCATAGCTGACACAGAGCCATCTGCCACAAACCTGTGGCAGCTTCAGATCTCCAATCCCTGCCACCACCCCAACGCAAATTAAATACAGATTCCTAGAGACGCTATGATGGTTACACATGTCCTCGGCATCACATGTAGGAGACTGTTCAAAAAAAAATATGTGGCCTGTTGTATAACCGCACTCATGTATCCCATATGTGGTGCCACATTGAATTTCCGGTTGAATCCGTTTTTATCCTTTGTACTGGATGACATGGTGCCTGAATTCTTTCTCTCTGCCGACACGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031038_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=PD(18.7=90.3)
A:
NO
C2:
PF0053415=Glycos_transf_1=PD(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000059679fB6298
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACACCTGAACAGCTTTCA
R:
TTTGCGACTTAGCCCCATCTG
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]