RnoEX0040384 @ rn6
Exon Skipping
Gene
ENSRNOG00000031038 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:RGD Symbol;Acc:1563393]
Coordinates
chr3:29660785-29705985:-
Coord C1 exon
chr3:29705946-29705985
Coord A exon
chr3:29663752-29663849
Coord C2 exon
chr3:29660785-29660977
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTCTATGTGGACTTTCCAGAGA
3' ss Score
5.4
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GCAGGTACCAGATCGGATATCAGTACATCCGGATCATAAG
Seq A exon
AGATGTTTAAGTAAGGGACGACTTACTCCTGACCATGTATGCACCATCCTGTAGGCCGAGACCATAGACTTGAATTGAATAGAAAGGAAAAAGCAAAA
Seq C2 exon
GTTTGATCAAGCCAATGAGTATTCTTATCATTGAGGCATTTTATGGAGGCTCCCATCGACAGCTGGTAGAGCTGCTCCGAGAAGAAGTGGATGACTGTGTGCTGTACACCCTTCCTGCAAAGAAATGGCATTGGCGAGCACGCACAGCAGCGCTGTACTTCTCACAGAGTGTGCCCAGCAGTGAGCACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031038_MULTIEX2-1/15=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF120383=DUF3524=PU(95.2=98.3),PF120383=DUF3524=PU(1.9=1.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTACCAGATCGGATATCA
R:
CGCCAATGCCATTTCTTTGCA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]